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freebsd-ports/biology
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Jason Evans 91fb724efd Change CONFIGURE_ENV --> USE_CSTD. [1] 
Add missing pkg-plist entry for Parsing.so. [2]

Change RUN_DEPENDS --> LIB_DEPENDS for optional math/atlas dependency.

Submitted by:	[1] erwin
Reported by:	[2] QAT
2009-06-10 01:25:02 +00:00
..
adun
- fix build for custom LOCALBASE in UL subdir
2009-06-02 02:33:05 +00:00
ariadne
…
artemis
…
avida
bump PORTREVISION after cmake update
2009-03-24 19:13:32 +00:00
babel
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belvu
…
biococoa
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biojava
- Update to 1.7
2009-05-01 09:33:42 +00:00
blast
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blat
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boinc-simap
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chemeq
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clustalw
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consed
Welcome to the new linux ports infrastructure which allows using
2009-03-19 17:28:51 +00:00
crimap
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crux
Change CONFIGURE_ENV --> USE_CSTD. [1]
2009-06-10 01:25:02 +00:00
distribfold
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dna-qc
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dotter
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embassy
- Mark BROKEN does not compile
2009-03-23 21:56:39 +00:00
emboss
- Update to 0.1.24
2009-03-14 15:17:06 +00:00
fasta
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fasta3
- Update to 35.4.7 [1]
2009-06-09 07:53:37 +00:00
fastdnaml
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finchtv
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fluctuate
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garlic
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genpak
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gff2ps
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gmap
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gperiodic
…
grappa
…
hmmer
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jalview
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kinemage
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L-Breeder
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lagan
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lamarc
- Mark most of my ports MAKE_JOBS_SAFE=yes
2009-05-16 06:27:56 +00:00
libgenome
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libsbml
LibSBML is an open-source programming library to help you read, write,
2009-05-28 23:36:10 +00:00
linux-foldingathome
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lsysexp
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mafft
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mapm3
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migrate
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molden
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mopac
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mrbayes
Fix LIB_DEPENDS on devel/readline: its sh lib version was bumped recently from
2009-05-12 11:28:17 +00:00
mummer
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muscle
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ncbi-toolkit
- Update to 2009.03.01
2009-03-28 16:59:39 +00:00
njplot
Convert most of remaining ports that depend on xorg-libraries to
2009-06-09 15:33:28 +00:00
ortep3
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p5-AcePerl
- Mark most of my ports MAKE_JOBS_SAFE=yes
2009-05-16 06:27:56 +00:00
p5-Bio-ASN1-EntrezGene
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p5-Bio-Das
- Update to 1.11
2009-06-08 09:30:07 +00:00
p5-Bio-Glite
Bio::Glite is an interface to G-language Genome Analysis Environment
2009-04-02 18:24:59 +00:00
p5-Bio-Graphics
- Update to 1.95
2009-06-02 21:34:06 +00:00
p5-Bio-Phylo
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p5-bioperl
Remove variable PERL_VER from the ports tree at all - because
2009-03-05 17:56:24 +00:00
p5-bioperl-run
- Update to 1.6.1
2009-03-19 20:54:05 +00:00
paml
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phd2fasta
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phrap
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phred
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phylip
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platon
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povchem
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primer3
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protomol
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psi88
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py-biopython
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pymol
- Update lang/python26 and make Python 2.6.2 to the default Python version
2009-06-08 22:30:55 +00:00
rasmol
Convert most of remaining ports that depend on xorg-libraries to
2009-06-09 15:33:28 +00:00
recombine
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ruby-bio
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seaview
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seqio
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sim4
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ssaha
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t_coffee
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tinker
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treepuzzle
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treeviewx
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tRNAscan-SE
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wise
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xdrawchem
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xmolwt
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Makefile
Add the biology/crux port.
2009-06-08 23:49:59 +00:00