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770 Commits

Author SHA1 Message Date
Pav Lucistnik
775ed95279 - Distfiles change every few days, so drop md5 checking on them 
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
 2004-11-18 07:58:41 +00:00
Pav Lucistnik
cfaac59499 Add blast, a powerful software package for gene and protein identification, 
using sensitive, selective and rapid similarity searches of protein and
nucleotide sequence databases.

PR:		ports/69636
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar>
 2004-11-11 21:35:04 +00:00
Joe Marcus Clarke
46a4d69571 Bump PORTREVISIONS for all ports that depend on atk or pango to ease in the 
big upgrade.
 2004-11-07 22:37:47 +00:00
Pav Lucistnik
6743d66769 - Fix build on amd64 (crude hack to pass -fPIC to c++ compiles) 
Reported by:	pointyhat via kris
Tested on:	arved's box
 2004-11-06 23:12:14 +00:00
Kevin Lo
53d3206a26 Update to 3.14 
PR: ports/72422
Submitted by: Choe, Cheng-Dae <whitekid@gmail.com>
 2004-11-06 03:55:37 +00:00
Jeremy Messenger
4962101ad1 Correct a typo: s/linux-opera/linux-openmotif/g. 2004-11-01 22:26:55 +00:00
Pav Lucistnik
74b56bc3f6 - Update to 2004.06.16 
Inspired by:	ports/72726
Approved by:	maintainer timeout (2 weeks)
 2004-11-01 22:21:02 +00:00
Jeremy Messenger
174d059edf Chase the linux-openmotif shared library version and mark biology/spdbv as 
broke, I get no respone from the maintainer since Oct 22, 2004. The
www/linux-opera works fine with new linux-openmotif. Also, bump PORTREVISION.

To fix or update for biology/spdbv is welcome, I shall commit them if I get
patch(es) in my Inbox.
 2004-11-01 21:25:10 +00:00
Kris Kennaway
1438099ab0 Now installs on FreeBSD 5.x. 2004-10-28 21:01:05 +00:00
Pav Lucistnik
7d98b3c8b4 - Update to 1.30 
PR:		ports/71400
Submitted by:	Stefan Walter <sw@gegenunendlich.de>
Approved by:	maintainer timeout (2 months)
 2004-10-27 20:39:17 +00:00
Maho Nakata
df33287cc1 Avoid the use of != statements in ports Makefile 
PR:		71095
Submitted by:	eik
 2004-10-24 03:37:02 +00:00
Pav Lucistnik
bd787bee6f - Update to 3.62 
- Install font files

PR:		ports/72212
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar>
Approved by:	David A. Bader <dbader@ece.unm.edu> (maintainer)
 2004-10-11 22:26:34 +00:00
Kris Kennaway
90abb24f53 BROKEN on 5.x: Does not compile 
Approved by:    portmgr (self)
 2004-09-29 05:45:34 +00:00
Thierry Thomas
22a6a2b711 Upgrade to latest revision to make fetchable again. 
Approved by:	portmgr (marcus)
 2004-09-25 08:06:08 +00:00
Thierry Thomas
c6723a8a1a Update config.h and unbreak. 
PR:		ports/71505
Submitted by:	maintainer
Approved by:	portmgr (marcus).
 2004-09-24 05:22:57 +00:00
Alexey Dokuchaev
dbc388ef77 The build should be fixed now, so remove BROKEN mark. 
Approved by:	portmgr (marcus), fjoe (mentor, implicit)
 2004-09-23 07:10:32 +00:00
Kris Kennaway
5c6f51f8b9 BROKEN on 5.x: Does not compile 
Approved by:    portmgr (self)
 2004-09-19 01:33:42 +00:00
Kris Kennaway
4147818b89 BROKEN on 5.x: Does not install 
Approved by:	portmgr (self)
 2004-09-19 01:18:56 +00:00
Kris Kennaway
de0cb02f0c BROKEN on 5.x: Does not install 
Approved by:    portmgr (self)
 2004-09-18 16:35:47 +00:00
Alexey Dokuchaev
6155fc8ed5 Unbreak the build on 5.X and -CURRENT. 
Reported by:	pointyhat.freebsd.org
Approved by:	portmgr (marcus), fjoe (mentor, implicit)
 2004-09-18 08:14:56 +00:00
Kris Kennaway
e9cb0e0ba3 BROKEN on 5.x: Does not compile 
Approved by:    portmgr (self)
 2004-09-17 22:47:50 +00:00
Yen-Ming Lee
1c60fe9d1f - add missing MAN1 and MAN3 
- apply DATADIR, EXAMPLESDIR, and DOCSDIR in PLIST
- update the usage of NOPORTDOCS

PR:		71322
Submitted by:	leeym
Approved by:	Fernan Aguero <fernan@iib.unsam.edu.ar>
 2004-09-03 17:04:38 +00:00
Thierry Thomas
33975deea1 - Unbreak by upgrading to 4.2; 
- Use DIST_SUBDIR because tarball is not versioned;

- Add sysdate to PORTVERSION to handle minor revisions;

- Do some cleaning.
 2004-08-19 22:24:21 +00:00
Edwin Groothuis
340ed0fa0d biology/lsysexp is not broken 
fix gtk build error

PR:		ports/70598
Submitted by:	David Yeske <dyeske@yahoo.com>
 2004-08-18 01:47:39 +00:00
Kris Kennaway
bc18221e59 This is now buildable on 5.x, remove BROKEN. 2004-08-17 10:29:40 +00:00
Mathieu Arnold
3a7b17911b After devel/p5-File-Temp has gained an IGNORE for PERL_LEVEL > 500800, all 
these ports were broken because they always depended on it. I've rearranged all
the dependencies to fit the new scheme.
 2004-08-12 12:48:01 +00:00
Pav Lucistnik
679e4b3ae4 - Update to 5.2 
PR:		ports/69799
Submitted by:	Jan Lentfer <Jan.Lentfer@web.de> (maintainer)
 2004-07-30 22:02:00 +00:00
Eric Anholt
b78a6067e6 Use X_IMAKE_PORT instead of dist-specific imake dependencies. While here, 
make the BROKEN message a little more informative.
 2004-07-23 20:31:09 +00:00
Kirill Ponomarev
1d6c8de438 Update to version 2.7.2.1.1 
PR:		ports/68861
Submitted by:	Ports Fury
 2004-07-09 18:01:11 +00:00
Joe Marcus Clarke
9e5632dd66 Apply a big libtool patch to allow porters to use the libtool installed by 
the libtoolX ports instead of the one included with each port.  Ports that
set USE_LIBTOOL_VER=X will now use the ports version of libtool instead of
the included version.  To restore previous behavior, use the new macro,
USE_INC_LIBTOOL_VER.  Both macros accept the same argument: a libtool version.

For example, to use the ports version of libtool-1.5, add the following to
your Makefile:

USE_LIBTOOL_VER=        15

To use the included version of libtool with extra hacks provided by
libtool-1.5, add the following to your Makefile:

USE_INC_LIBTOOL_VER=    15

With this change, ports that had to add additional libtool hacks to prevent
.la files from being installed or to fix certain threading issues can now
delete those hacks (after appropriate testing, of course).

PR:		63944
Based on work by:eik and marcus
Approved by:	ade (autotools maintainer)
Tested by:	kris on pointyhat
Bound to be hidden problems:	You bet
 2004-07-09 17:43:11 +00:00
Volker Stolz
9c3292f5bd Fix distsite 
PR:		ports/67473
Submitted by:	Roman Neuhauser
Approved by:	maintainer timeout
 2004-07-06 14:31:55 +00:00
Kris Kennaway
1b8fea6d1c BROKEN: Checksum mismatch 2004-07-03 09:53:15 +00:00
Volker Stolz
2353cd2094 Update to 4.6 
PR:		ports/68561
Submitted by:	maintainer
 2004-07-02 09:53:25 +00:00
Kris Kennaway
6212ab4dc6 BROKEN: Does not build 2004-07-02 08:20:02 +00:00
Mark Linimon
44c1e6c9af Update to fix fetch. Rework PORTVERSION to be more like biology/fasta3 
and pacify portlint.

PR:		ports/67428
Submitted by:	Roman Neuhauser <neuhauser at chello dot cz>
Approved by:	maintainer timeout (one month)
 2004-07-01 06:24:01 +00:00
Mark Linimon
11bda5392b Chase mastersite and fix checksum to unbreak. (Changes are inclusion of a 
logfile, one Linux-only change, and one change in a test script).  Assign
submitter as new maintainer as current one has not responded to PRs for
some time.

PR:		ports/68199
Submitted by:	Fernan Aguero <fernan at iib dot unsam dot edu dot ar>
 2004-07-01 03:02:23 +00:00
Mark Linimon
3152da13d8 Update to 1.7.6.1. 
PR:		ports/67429
Submitted by:	Roman Neuhauser <neuhauser at chello dot cz>
Approved by:	maintainer timeout (4 weeks)
 2004-06-30 06:55:56 +00:00
Mario Sergio Fujikawa Ferreira
70a15e78fc Drop maintainership 2004-06-24 14:28:12 +00:00
Volker Stolz
0eccc87d44 Fix MASTER_SITES: 
- add trailing slash
 - ftp.ebi.ac.uk only has 2.8.0

PR:		ports/67427
Submitted by:	Roman Neuhauser
Approved by:	maintainer timeout
 2004-06-23 08:20:21 +00:00
Kirill Ponomarev
bd7a90118c Add ariadne 1.3, programs to compare protein sequences and 
profiles, using the Smith-Waterman algorithm.

PR:		ports/67811
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar>
 2004-06-22 14:29:59 +00:00
Kris Kennaway
3c088f1b9a Set an expiry date of 2004-08-20 for these BROKEN/IGNORE/FORBIDDEN 
ports.  They will be removed on or after that date if they are still
broken and no fix has been submitted to GNATS.
 2004-06-21 21:27:46 +00:00
Kris Kennaway
6c65e16111 BROKEN: Checksum mismatch 2004-06-20 08:40:40 +00:00
Eric Anholt
50a90d3074 Replace explicit imake dependency with USE_IMAKE=yes 2004-06-18 03:36:32 +00:00
Mario Sergio Fujikawa Ferreira
8248f42a4a Update to 20040613 release 2004-06-13 15:40:24 +00:00
Kirill Ponomarev
2142b7d7c5 - Remove obsolete MASTER_SITES 
PR:		ports/67690
Submitted by:	Roman Neuhauser <neuhauser@chello.cz>
 2004-06-08 08:19:40 +00:00
Pav Lucistnik
02953055d8 - Update MASTER_SITES 
PR:		ports/67472
Submitted by:	Roman Neuhauser <neuhauser@chello.cz>
 2004-06-02 03:32:57 +00:00
Edwin Groothuis
60bb63b450 [PATCH] biology/mopac patchsite fix 
this is a followup to ports/67432

	I completely overlooked the fact that the port was setting
	PATCH_SITES, here's a fix for that

	maintainer cc'd

PR:		ports/67441
Submitted by:	Roman Neuhauser <neuhauser@chello.cz>
 2004-06-01 08:07:15 +00:00
Edwin Groothuis
7f8badbf19 [PATCH] biology/mopac distsite fix 
connection refused (portsurvey reports timeouts)

PR:		ports/67432
Submitted by:	Roman Neuhauser <neuhauser@chello.cz>
 2004-06-01 02:28:01 +00:00
Edwin Groothuis
491939fee0 [PATCH] biology/gff2ps distsite fix 
couple distfiles with their respective urls to reduce time and traffic

PR:		ports/67430
Submitted by:	Roman Neuhauser <neuhauser@chello.cz>
 2004-06-01 02:23:41 +00:00
Pav Lucistnik
840f7cfafa - Update WWW 2004-05-29 23:03:53 +00:00
Kirill Ponomarev
233a75db9c - Fix MASTER_SITES 
PR:		ports/67045
Submitted by:	Stefan Walter <sw@gegenunendlich.de>
 2004-05-23 07:36:35 +00:00
Pav Lucistnik
5aac56ca94 - Remove long time unresponsive MASTER_SITE 
PR:		ports/67016
Submitted by:	Roman Neuhauser <neuhauser@chello.cz>
 2004-05-22 13:19:02 +00:00
Kirill Ponomarev
725ab6d62d - Update MASTER_SITES and WWW: line 
PR:		ports/67015
Submitted by:	Roman Neuhauser <neuhauser@chello.cz>
 2004-05-22 07:29:47 +00:00
Thierry Thomas
7c2a40a70b Add forgotten patches... 2004-05-21 13:24:56 +00:00
Kris Kennaway
48bf311b1a BROKEN: Broken pkg-plist 2004-05-21 05:31:23 +00:00
Oliver Eikemeier
2a40961e20 unbreak, only minor changes in the distfiles (see PR) 
Since the distfile has no version number, put it in
DIST_SUBDIR=	${PORTNAME}-${PORTVERSION}

PR:		66817
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (new maintainer)
 2004-05-18 14:59:02 +00:00
Thierry Thomas
ff68a3b77e Add a missing BUILD_DEPENDS. 
Reported by:	Kris.
 2004-05-11 05:40:32 +00:00
Thierry Thomas
805c70e719 Upgrade to 2.0b7 and unbreak. 2004-05-10 19:26:42 +00:00
Markus Brueffer
772bdda629 Fix MASTER_SITES 2004-05-09 11:04:04 +00:00
Maho Nakata
c72ea155ce Make portlint happy by replacing space to tab 
PR:		65409
Submitted by:	trevor
 2004-05-06 19:49:54 +00:00
Pete Fritchman
d73f10db58 - update to 4.5.3 
- remove version from pkg-descr

PR:		65972
Submitted by:	maintainer
 2004-05-02 03:28:49 +00:00
Kirill Ponomarev
8daa07cec3 - Honor CFLAGS 
PR:		ports/65599
Submitted by:	michael johnson <ahze at ahze dot net>
 2004-04-16 08:08:11 +00:00
Kris Kennaway
df19f65e91 BROKEN: Checksum mismatch 2004-04-12 03:37:14 +00:00
Joe Marcus Clarke
fa63df0f4d Mark this port BROKEN with gtk+-2.4. 
Reported by:	bento via kris
 2004-04-11 02:47:56 +00:00
Trevor Johnson
c0669efed5 Tidy up whitespace. 2004-04-10 17:26:55 +00:00
Trevor Johnson
6e7d58c396 Trim whitespace. 2004-04-10 16:07:10 +00:00
Trevor Johnson
da9020afbe Add openbabel dependency (bento log forwarded by kris). 2004-04-09 00:59:36 +00:00
Trevor Johnson
2dedd436c1 Update to 1.7.8. 2004-04-07 17:26:09 +00:00
Trevor Johnson
98c7bd4779 After patching, remove the carriage-return characters from povchem.c 
because they because they choke GCC 2.95.4.

noticed by:	kris
 2004-04-07 15:39:34 +00:00
Trevor Johnson
e712010a40 Chase home page. 2004-04-07 15:05:39 +00:00
Adam Weinberger
f9af6da84e Fix build with gtk 2.4. 2004-04-05 12:59:13 +00:00
Joe Marcus Clarke
731798cdcf Chase the glib20 update, and bump all affected ports' PORTREVISIONs. 2004-04-05 03:31:02 +00:00
Kris Kennaway
98dd96ee20 Remove category pkg/COMMENT files in favour of a COMMENT variable in the 
category makefile.

Submitted by:	Matthew Seaman <m.seaman@infracaninophile.co.uk>
PR:		59651
 2004-04-02 07:29:48 +00:00
Trevor Johnson
8232e82f85 SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
Akinori MUSHA
2956c3762c Add SIZE data. 
Submitted by:	trevor
 2004-03-22 15:05:32 +00:00
Maho Nakata
308503d550 Do not hardcord PICFLAG 
Submitted by:	ru
 2004-03-20 05:20:46 +00:00
Maho Nakata
10e9ee4f10 Backout previous change of PICFLAG, since 
behaviour of -fPIC and -fpic are different.
Here is the comment form obrien:

--
"-fpic" is a [minor?] optimization for machines that can handle it:

  -fpic
    Generate position-independent code (PIC) suitable for use in a shared
    library, if supported for the target machine. Such code accesses all
    constant addresses through a global offset table (GOT). The dynamic
    loader resolves the GOT entries when the program starts (the dynamic
    loader is not part of GCC; it is part of the operating system). If
    the GOT size for the linked executable exceeds a machine-specific
    maximum size, you get an error message from the linker indicating
    that -fpic does not work; in that case, recompile with -fPIC instead.
    (These maximums are 16k on the m88k, 8k on the SPARC, and 32k on the
    m68k and RS/6000. The 386 has no such limit.)

  -fPIC
    If supported for the target machine, emit position-independent code,
    suitable for dynamic linking and avoiding any limit on the size of
    the global offset table. This option makes a difference on the m68k,
    m88k, and the SPARC.

Thanks to: obrien
 2004-03-19 04:20:12 +00:00
Maho Nakata
fb23a1b086 -fPIC is appropreate on all architectures. 
Submitted by: kris
 2004-03-18 23:06:11 +00:00
Trevor Johnson
3bca696b10 Add size data, approved by maintainers. 2004-03-18 18:01:13 +00:00
Maho Nakata
fc345a3c27 1) Silent version up without changing the version number 
very minor change in README
2) change WWW: section at pkg-descr
3) SIZEify

Submitted by:	kris via bento
 2004-03-18 04:57:07 +00:00
Trevor Johnson
4a38811bfa Add size data. 
Approved by:	maintainers
 2004-03-18 02:52:47 +00:00
Trevor Johnson
33fdc4cde2 SIZEify. 2004-03-17 18:29:46 +00:00
Maho Nakata
b39cd44eb9 1) update to 0.9.3 
2) honor PREFIX & LOCALBASE
3) SIZEify
4) possible fix for amd64 and ia64
 2004-03-17 10:47:29 +00:00
Ade Lovett
3f651573ad Whoa there, boy, that's a mighty big commit y'all have there... 
Begin autotools sanitization sequence by requiring ports to explicitly
specify which version of {libtool,autoconf,automake} they need, erasing
the concept of a "system default".

For ports-in-waiting:

	USE_LIBTOOL=YES		->	USE_LIBTOOL_VER=13
	USE_AUTOCONF=YES	->	USE_AUTOCONF_VER=213
	USE_AUTOMAKE=YES	->	USE_AUTOMAKE_VER=14

Ports attempting to use the old style system after June 1st 2004 will be
sorely disappointed.
 2004-03-14 06:17:56 +00:00
Kirill Ponomarev
03062baaf5 - Update to version 2003.09.21 
PR:		ports/64160
Submitted by:	Liam J. Foy <liamfoy@sepulcrum.org>
 2004-03-12 13:53:23 +00:00
Trevor Johnson
478d1f5670 Insert "-l" into PATCH_ARGS, to cause the "patch" command to ignore 
carriage-return characters in povchem.c which otherwise cause
patch-ab to fail to apply.
 2004-03-09 00:17:05 +00:00
Trevor Johnson
2233aa9126 Add MD5 of 2004-01-06 version of povchem.c. Its contents are 
identical to the 1999-08-22 version, except that the new file has
a carriage return character added at the end of each line, DOS-style.
 2004-03-09 00:15:51 +00:00
Mark Linimon
0f0f3b19d2 Unmark as broken for 4.x; instead, mark as ignore for perl < 5.6. 2004-03-08 03:29:16 +00:00
Kris Kennaway
f2084d1b29 BROKEN on amd64 and ia64: Does not compile (missing -fPIC) 2004-03-07 13:00:02 +00:00
Mark Linimon
a8e54cc065 Maintainer reports being unable to look after this port any longer. 
Thanks for your efforts in the past.
 2004-03-07 00:18:27 +00:00
Kirill Ponomarev
d4ffabec9f - Update to version 0.4 
PR:		ports/63478
Submitted by:	maintainer
 2004-02-28 09:56:06 +00:00
Kirill Ponomarev
bdad23b76b - Fix MASTER_SITES 
PR:		ports/63469
Submitted by:	maintainer
 2004-02-27 22:20:43 +00:00
Mario Sergio Fujikawa Ferreira
bb95407985 Update to 20040226 release 2004-02-27 00:01:02 +00:00
Kris Kennaway
d2eb9c33ea BROKEN on alpha: Does not compile 2004-02-23 03:59:05 +00:00
Kris Kennaway
45637d31d2 BROKEN on alpha 5.x: does not compile 2004-02-23 03:54:36 +00:00
Kris Kennaway
48bbc27c4f BROKEN: Checksum mismatch 2004-02-22 00:43:16 +00:00
Kris Kennaway
1850793ce0 BROKEN on 4.x: Configure fails 2004-02-22 00:06:35 +00:00
Kris Kennaway
414b01f7e2 BROKEN: Does not fetch 2004-02-21 21:48:55 +00:00
Kris Kennaway
b8fd938dc2 BROKEN: Checksum mismatch 2004-02-21 19:31:10 +00:00
Dag-Erling Smørgrav
7da5c3b016 Upgrade to 1.23. 
Approved by:	maintainer timeout
 2004-02-09 21:40:47 +00:00
Mario Sergio Fujikawa Ferreira
43485240fb USE_SIZEify 2004-02-08 01:14:05 +00:00
Kris Kennaway
8f878d60d1 Correct whitespace in COMMENT 2004-02-07 03:34:43 +00:00
Trevor Johnson
a049dd78cc Use PLIST_FILES (bento-tested, marcus-reviewed). 2004-02-06 13:12:53 +00:00
Trevor Johnson
3c175cb569 Use PLIST_FILES. 
Reviewed by:	marcus
 2004-02-05 20:38:07 +00:00
Joe Marcus Clarke
053fdb6a6b Bump PORTREVISION on all ports that depend on gettext to aid with upgrading. 
(Part 2)
 2004-02-04 05:21:48 +00:00
Kirill Ponomarev
d39eb55ced - Fix build on AMD64 
- Use DOCSDIR
 2004-02-01 22:02:22 +00:00
Pav Lucistnik
b2011bd5b6 - Update to 3.6.b 
PR:		ports/62142
Submitted by:	David A. Bader <dbader@ece.unm.edu> (maintainer)
 2004-01-31 16:06:24 +00:00
Kirill Ponomarev
c8e96952a6 - Update to version 2003.11.25 2004-01-29 10:09:29 +00:00
Trevor Johnson
e8d5605043 Add SIZE. 2004-01-27 20:51:07 +00:00
Christian Weisgerber
3b991c070e Yet another C++ fix. 
Reported by:	kris	(bento)
 2004-01-25 20:07:42 +00:00
Trevor Johnson
439b8a040c Use the CPIO macro defined in bsd.port.mk. 2004-01-22 12:18:43 +00:00
Mark Linimon
557dff9206 Major update from 0.7.2 to 1.4 by new maintainer. This is almost a complete 
rework of the port.

See the page http://news.open-bio.org/archives/cat_bioperl.html for the
changes between 1.2 and 1.4.  The older changes are in the CVS tree.

From the new maintainer:

	Note that this new port just handles the installation of bioperl and
	not of additional extra stuff (bioperl-gui, bioperl-corba-server,
	bioperl-corba-client). This is unlike the behaviour of the current
	port.

	The extra stuff, though still functional, had very little adoption
	among users, and does not appear to be currently supported/maintained.

PR:		ports/47303 (and subsequent)
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (new maintainer)
 2004-01-21 08:34:33 +00:00
Maho Nakata
a7e3bc1c4c silent updates of archives: 
a) program: Draw the hydrophobicity function F5
b) documentation: add very minor description not
   related FreeBSD.

1) bump portrevision
2) several clean ups for Makefile
 2003-12-28 08:02:14 +00:00
Kirill Ponomarev
141b1fd74b - Fix MASTER_SITES 
PR:		60417
Submitted by:	maintainer
 2003-12-20 12:20:49 +00:00
Mark Linimon
e81337a188 Mark as broken on 5.x due to the usual gcc terminating-character hassles. 
Notified mainatainer.
 2003-12-19 10:22:05 +00:00
Pav Lucistnik
dcf8c976c2 - Update to last snapshot 
PR:		ports/58511 (based on)
Submitted by:	Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp> (maintainer)
 2003-12-07 00:29:56 +00:00
Pav Lucistnik
8fbfe2305e - Update checksum again, seems author removes .ps version of documentation 
from tarball
- Unmark broken, it builds for me just fine

Approved by:	adamw (mentor)
 2003-11-21 22:28:34 +00:00
Trevor Johnson
7e223b8511 Define USE_PERL5_BUILD, not erroneous USE_PERL. 
Submitted by:	Oliver Eikemeier
 2003-11-20 15:06:14 +00:00
Trevor Johnson
318a536982 Define USE_PERL to make Perl available for (mostly deprecated) 
"perl -pi -e" construction.
 2003-11-20 13:51:47 +00:00
Pav Lucistnik
9e79d0a9c6 - Unbreak on 5.x 
Approved by:	adamw (mentor)
 2003-11-20 09:28:34 +00:00
Kirill Ponomarev
f1b2dca9e3 - Update to new version 2003.11.17 
- Unbreak this port
 2003-11-17 13:36:41 +00:00
Joe Marcus Clarke
7f26bf3bf0 unPERLify by using REINPLACE_CMD and SED where appropriate. 
PR:		47654
Submitted by:	Simon 'portlint' Schubert <corecode@corecode.ath.cx>
 2003-11-15 20:13:21 +00:00
Max Khon
93826fe929 Switch to wxgtk2. 2003-11-14 12:37:26 +00:00
Trevor Johnson
e99ceadaf6 Use the FIND and XARGS macros introduced in bsd.port.mk 1.391. 2003-11-13 14:45:08 +00:00
Trevor Johnson
11b0931878 Remove my e-mail address from comment blocks of ports 
I have contributed, in hopes of attracting less spam.
 2003-11-13 10:11:35 +00:00
Max Khon
2b84902e8e wxgtk-devel -> wxgtk 2003-11-09 19:34:52 +00:00
Max Khon
626ca478fe - Switch to wxgtk2 
- USE_MESA -> USE_GL
 2003-11-09 19:04:36 +00:00
Eric Anholt
b1e4f642e5 LIB_DEPENDS on libglut for libglut rather than soon-to-disappear Mesa3. 2003-11-07 20:45:29 +00:00
Adam Weinberger
c479bf51a5 Update to 2.0.7. 2003-11-07 16:50:32 +00:00
Eric Anholt
e4a14e5699 Mark BROKEN: distfile has changed. 2003-11-06 23:15:06 +00:00
James E. Housley
0e9cd423cb ${MASTER_SITES} are slow. This patch adds a mirror site to help 
fetch work more frequently.  This patch patches the Makefile from
PORTSDIR}/biology

PR:		58130
Submitted by:	MAINTAINER
 2003-11-06 11:32:30 +00:00
Max Khon
14988eebf4 Make this port use wxgtk 2.4.2. 2003-11-05 10:26:00 +00:00
Max Khon
cfe5492411 Chase wxgtk library name (and version) change. 2003-11-04 20:52:58 +00:00
Mark Linimon
43233244ca Pet portlint. 2003-11-03 21:01:28 +00:00
Edwin Groothuis
a27bc39328 Date: Tue, 04 Nov 2003 00:42:55 +0900 
From: Motomichi Matsuzaki <mzaki@e-mail.ne.jp>
Subject: Re: question about FreeBSD ports you maintain

Briefly, I have no time for maintaining ports.
So I wish to leave the maintainer position of these ports:

biology/fastdnaml
textproc/wv

Thanks you for maintaining the FreeBSD system.

                                        Best regards,
					Motomichi Matsuzaki
 2003-11-03 20:44:32 +00:00
Kris Kennaway
09b69954f2 Mark BROKEN (see bento logs). These ports are scheduled for removal 
after Feb 2 2004 if they are still broken at that time and no fixes
have been submitted by PR.
 2003-11-03 03:56:42 +00:00
Edwin Groothuis
df3c9e78bd ports with possibly unreachable MAINTAINERs 
*** addresses that seem to be dead:

PR:		ports/58694
Submitted by:	Oliver Eikemeier <eikemeier@fillmore-labs.com>
 2003-11-02 02:48:08 +00:00
Mark Linimon
817fa652d7 Chased new mastersite per distfile survey. Notified maintainer. 2003-10-26 08:19:46 +00:00
Ying-Chieh Liao
c634b4bb83 utilize SITE_PERL 
PR:		58166
Submitted by:	Cheng-Lung Sung <clsung@dragon2.net>
 2003-10-24 12:05:09 +00:00
Kris Kennaway
d4788043a6 Respect CC and CFLAGS 2003-10-23 00:01:04 +00:00
Sergey A. Osokin
958842c5c6 Cosmetic fix: use %%DOCSDIR%% macro. 
No functionally changes.

Submitted by:	Oleg Karachevtsev <ok@etrust.ru>
A part of PR:	57992
 2003-10-22 09:37:18 +00:00
Kirill Ponomarev
c05d3fc123 - Update to 0.5.2 
PR:		58304
Submitted by:	Clement Laforet <sheepkiller@cultdeadsheep.org>
 2003-10-20 22:41:04 +00:00
Kris Kennaway
19b417918e Don't remove share/java/classes system directory. 2003-10-19 02:26:52 +00:00
Mark Linimon
280fea9546 Fixes the checksum problem, but doesn't fix the port; adds a BROKEN 
line about how it fails.  Some other interested person will have
to take it from here.

PR:		56882
 2003-10-15 23:56:43 +00:00
Akinori MUSHA
586e37458f Update to 0.5.3. 2003-10-14 22:25:59 +00:00
Daichi GOTO
50e96887d2 update biology/nab: 4.5.1 -> 4.5.2 
PR:		57970
Submitted by:	M. L. Dodson <bdodson@scms.utmb.edu> (maintainer)
 2003-10-14 12:18:51 +00:00
Kris Kennaway
c68a93561d BROKEN: Broken pkg-plist 2003-10-13 06:31:57 +00:00
Kris Kennaway
c2b0bb508d BROKEN: Does not fetch 2003-10-12 22:31:49 +00:00
Edwin Groothuis
ec14a6f561 Port update (maintainer): biology/wise 
Fenner's porsurvey show wise no longer available at original
	site.  Original site readme shows it has moved so update
	the MASTER_SITES accordingly.

PR:		ports/57154
Submmited by:	Tony Maher <tonymaher@optushome.com.au>
 2003-09-24 11:32:44 +00:00
Sergey A. Osokin
f37f7775e3 Make portlint(1) happy by changing strip to ${STRIP_CMD} 
Submitted by:	Oleg Karachevtsev <ok@etrust.ru>
PR:		56998
 2003-09-24 09:37:11 +00:00
Edwin Groothuis
bdb4445a67 Update port: biology/gperiodic to 2.0.6 
- Update to version 2.0.6

PR:		 ports/56522
Submitted by:	 KATO Tsuguru <tkato@prontomail.com>
 2003-09-08 06:09:31 +00:00
Edwin Groothuis
ec3cd3ad7f new port:biology/lsysexp 
L-system Explorer is a program used for viewing and creating
	L-system fractals.

	The following features are supported:

	- Over 500 builtin L-systems, arranged into about 20 groups.
	- Ability to create and save custom L-systems and L-system groups.
	- Abilty to save images of L-systems (in PNG or JPEG format).
	- Multiple L-systems can be viewed at the same time.
	- Able to use custom colors and gradients.
	- Can also generate random gradients, or completely random colors.
	- Able to draw using lines, points, or a random combination of both.

PR:		iports/51400
Submitted by:	David Yeske <dyeske@yahoo.com>
 2003-09-03 02:23:23 +00:00
Maho Nakata
17cbc7c345 Silent changes to the port distfile which *not* have significant 
functional differences.
just changing very minor change of documatation, adding very minor
functionality and some cleanup for coding

Submitted by:	bento's log
 2003-09-01 22:00:00 +00:00
Kirill Ponomarev
c101866e9f - Add an end-of-string to each line of the input 
when parsing the input files

PR:		56043
Submitted by:	maintainer
 2003-08-28 04:51:02 +00:00
Akinori MUSHA
0f1f27c54b Update to 0.5.2. 2003-08-22 22:53:54 +00:00
Hye-Shik Chang
c76af54099 Fix build on python2.3 2003-08-20 10:40:37 +00:00
Norikatsu Shigemura
efb928619b o Main modification 
graphics/gd(based on 1.8.4)    -> graphics/gd1
  graphics/gd2(based on 2.0.15)  -> graphics/gd
  graphics/p5-GD(based on 1.41)  -> graphics/p5-GD1
  graphics/p5-GD2(based on 2.07) -> graphics/p5-GD
  japanese/gd                    -> japanese/gd1
  japanese/gd2                   -> japanese/gd
o Include some feature
  WITH_XPM(w/, w/o WITHOUT_X11)
o Chase this modification
o Fix build error [1]

PR:		ports/54540
Submitted by:	Ports Fury
Approved by:	maintainer (blanket)
Reported by:	bento via kris [1]
 2003-08-18 16:15:10 +00:00
Kris Kennaway
736746419e As announced on May 6, remove the broken p5-bioperl-devel port. 2003-08-08 03:31:11 +00:00
Kris Kennaway
616a6528af BROKEN: Checksum mismatch 2003-08-07 09:29:17 +00:00
Hye-Shik Chang
2b12324a99 Fix python version detection routines to cope with python 2.3's 
boolean representation.
 2003-08-01 22:04:57 +00:00
Maho Nakata
636cfee514 Somehow pkg-plist is removed... 
Pointy hat to: myself
 2003-08-01 03:31:42 +00:00
Maho Nakata
c99edb7512 a) Update to 1.7.3 
b) Maintainer timeout:
   This PR is submitted by Thu May 08 07:30:18 PDT 2003
   but no reply from the maintainer.

PR:		51971
Submitted by:	KATO Tsuguru <tkato@prontomail.com> aka Ports Fury
 2003-08-01 03:27:54 +00:00
Maho Nakata
7c5ae7045b Add USE_XLIB=yes to compile 
Submitted by:	kris via bento
 2003-07-31 08:06:09 +00:00
Akinori MUSHA
c78ef63727 Update to 0.5.1. 2003-07-29 06:44:28 +00:00
Maho Nakata
4dd4b89f44 A new port garlic, free molecular viewer and editor, free molecular 
visualization program, protein structure, DNA structure, PDB,
molecular rendering, biological macromolecule.
 2003-07-28 06:38:37 +00:00
Kirill Ponomarev
d5ad075240 - Update to version 2.0.5 
PR:		54899
Submitted by:	KATO Tsuguru <tkato@prontomail.com>
Approved by:	fjoe (mentor) (implicit)
 2003-07-27 16:00:31 +00:00
Maho Nakata
10c43988bd Some clean-up. 
a) ECHO-> ECHO_CMD
b) place of WITH_OPTIMIZED_FLAGS seems to be wrong.
c) fix errors reported from freshports.org
 2003-07-25 22:30:55 +00:00
Maho Nakata
aa86451d35 Duplicated the pre-extract:' and post-build:' 
Submitted by:	Glenn Johnson <gjohnson@srrc.ars.usda.gov>
Pointy hat to:	myself
 2003-07-25 21:19:09 +00:00
Maho Nakata
7a5f7030ac a) Some corrupts with Makefile and pkg-plist. 
b) forgot to notice that drop maintainership to ports@

Submitted by:	Glenn Johnson <gjohnson@srrc.ars.usda.gov>
Pointy hat to:	myself
 2003-07-25 07:19:40 +00:00
Maho Nakata
d0d6c6466b a) Forgot to update distinfo 52498 
b) added LEGAL. author requests no distribution
   except from his FTP site
c) clean-ups for compiler optimization

Submitted by:	Glenn Johnson <gjohnson@srrc.ars.usda.gov>
Pointy hat to:	maho; partially :)
 2003-07-25 02:48:05 +00:00
Maho Nakata
7f03690b18 Update to 0.90 2003-07-24 07:06:17 +00:00
Maho Nakata
efc116207e enhancement, build and install the opengl viewer, moldenogl. 
update to 3.9, not 3.8, which is newer :)

Committed by maintainer timeout:
> Sat Apr  5 17:46:57 EST 2003 - edwin - informed maintainer

PR:		47177
Submitted by:	Glenn Johnson <gjohnson@srrc.ars.usda.gov>
 2003-07-19 04:17:06 +00:00
Maho Nakata
2b7927a921 honor CFLAGS and FFLAGS 
PR:		54396
Submitted by:	Glenn Johnson <gjohnson@srrc.ars.usda.gov>
 2003-07-19 03:58:51 +00:00
Maho Nakata
3c2eb776a2 Maintainer update of biology/tinker port to version 4.0. 
PR:		52498
Submitted by:	Glenn Johnson <gjohnson@srrc.ars.usda.gov>
 2003-07-19 03:48:44 +00:00
Yen-Ming Lee
fb228ea556 Add semi-colons(;) after declare statements that go in the povray scene file 
so that povchem works with povray-3.5.

Maintainer prefer not to depend on ImageMagick since users can use their
favorite picture viewer. display isn't the only one choice.

Drop maintainership.

PR:		54397
Submitted by:	Glenn Johnson <gjohnson@srrc.ars.usda.gov>
Reviewed by:	Chen-hsiung Chan <frankch@waru.life.nthu.edu.tw>
 2003-07-14 06:50:15 +00:00
Norikatsu Shigemura
99a390f50b o Change library name from libgd to libgd1. 
o Do not install everything except headers and libraries
  (to avoid conflicting with graphics/gd2)
o Fix dependency on new libgd1(for many ports).

PR:		ports/54100
Submitted by:	Ports Fury
 2003-07-11 18:16:14 +00:00
Sergey A. Osokin
afa7efcce6 s/NOPORTSDOCS/NOPORTDOCS/ [1] 
Use %%PORTDOCS%%%%DOCSDIR%% in pkg-plist.

PR:		53911 [1]
Approved by:	maintainer
 2003-07-11 11:01:13 +00:00
Daichi GOTO
a1ab1ee112 update biology/nab: 4.4 -> 4.5.1 
PR:		52786
Submitted by:	M. L. Dodson <bdodson@scms.utmb.EDU> (maintainer)
 2003-07-08 11:50:36 +00:00
Akinori MUSHA
9d7ec05179 Update to 0.5.0. 2003-06-26 03:34:44 +00:00
Daichi GOTO
262d632dae update ports/biology/act to latest release (v2) 
PR:		49093
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar>
 2003-06-23 13:37:39 +00:00
Erwin Lansing
9a7422c0c5 - update to 1.83 
- give maintainership to submitter as the old maintainer's
  address bounces

PR:		52054
Submitted by:	Philip M. Gollucci <philip@p6m7g8.com>
Approved by:	maintainer bounces
 2003-06-17 18:39:47 +00:00
Kris Kennaway
93872f18cc Move inclusion of bsd.port.pre.mk later in the file for conditional BROKEN 
tag.  Early inclusion caused problems for some ports, so to be safe I'm
updating all of them.

Pointy hat to:	kris
 2003-06-04 22:43:38 +00:00
Adam Weinberger
0225134607 Assign MAINTAINER to ports@FreeBSD.org. 
PR:		ports/52534
Submitted by:	Christian Brueffer <chris@unixpages.org>
 2003-06-04 18:58:11 +00:00
Tim Vanderhoek
29763acb4a Upgrade to 2003.01.21. Appears to only add some more file export/print 
options.  Additional patches were necessary since the fltk port seems
to have been upgraded and thus also broken this port (which would
been already broken due to the checksum failure).
 2003-05-22 05:59:32 +00:00
Tim Vanderhoek
826bc61d7e Add back the WWW which was inexplicably deleted in a previous 
revision.  Make a few organisational improvements.  However, be
too lazy to move to pkg-message a note that really shouldn't
be necessary for the end user at all.
 2003-05-22 02:44:05 +00:00
Pete Fritchman
2fa167da9b - fix build under gcc 3.3 
- respect CC/CFLAGS

PR:		52013
Submitted by:	maintainer
 2003-05-19 01:48:33 +00:00
Kris Kennaway
257ef67bc8 Back out previous commit, the port was fixed a few days ago. 2003-05-18 21:52:02 +00:00
Kris Kennaway
9c288e873f BROKEN on 5.1: bad C++ 2003-05-18 09:55:25 +00:00
Michael Landin
05b1705af9 - Update to latest release. 
- Better autoconf/automake so patches no longer needed
- Changed dependency. (now wxgtk-devel)

PR:		51741
Submitted by:	maintainer
Approved by: 	roberto(mentor)
 2003-05-14 13:09:11 +00:00
Kris Kennaway
cdb6ec2c28 BROKEN: Broken pkg-plist 2003-05-06 23:36:56 +00:00
Tilman Keskinoz
b2097beda0 Update to 2003.04.21 
PR:		51709
Submitted by:	Tony Maher <tonymaher@optushome.com.au>
 2003-05-05 12:24:08 +00:00
Pete Fritchman
42220eeb24 - unbreak on 4.x: add dependency on gdkpixbuf, fix Makefiles to compile with 
the correct libraries
- add a WITH_OPTIMIZED_CFLAGS knob

PR:		51614
Submitted by:	maintainer
 2003-05-03 18:27:53 +00:00
Maho Nakata
1132a00c6e Updated to 0.8.6. 
Submitted by: M. L. Dodson <bdodson@scms.utmb.EDU>
Pkg-plist by: maho
 2003-05-03 03:45:31 +00:00
Mario Sergio Fujikawa Ferreira
c5e7423b03 Update to 20030425 snapshot 2003-04-25 18:01:46 +00:00
Joe Marcus Clarke
4fb7eb3a61 Remove USE_GNOMENG. 2003-04-18 04:54:11 +00:00
Edwin Groothuis
80f9519693 Update the biology/tinker Makefile so it builds on -current 
PR:		ports/50371
Submitted by:	Glenn Johnson <gjohnson@srrc.ars.usda.gov>
 2003-03-30 06:43:14 +00:00
Christian Weisgerber
3e8676b331 * Fix build with GCC3 (-CURRENT). 
* Honor CXX/CXXFLAGS.
* Use predefined DOCSDIR and EXAMPLESDIR variables.

Approved by:	maintainer timeout
 2003-03-25 12:28:57 +00:00
Ade Lovett
7e52725f2a Clear moonlight beckons. 
Requiem mors pacem pkg-comment,
And be calm ports tree.

E Nomini Patri, E Fili, E Spiritu Sancti.
 2003-03-07 06:14:21 +00:00
Trevor Johnson
5e37fb828f Retire comment file. 2003-03-01 14:34:33 +00:00
Mario Sergio Fujikawa Ferreira
55dc9026c2 Update to 20030227 snapshot 2003-02-28 01:46:50 +00:00