Kevin Lo 30d7b16772 Initial import of artemis 4.0 ...

Artemis is a  DNA sequence viewer and annotation tool.

PR: 32914
Submitted by: Camson <chuynh@biolateral.com.au>

2001-12-22 14:39:40 +00:00

..

artemis

Initial import of artemis 4.0

2001-12-22 14:39:40 +00:00

babel

* Replace pkg-message about setting BABEL_DIR with a wrapper script

2001-12-02 13:09:47 +00:00

biojava

Style police: WWW tags should either end in a file/script or TRAILING /; Fix the later case

2001-11-20 23:29:38 +00:00

chemeq

Add %%PORTDOCS%% suppor to pkg-plist.

2001-07-03 14:53:14 +00:00

clustalw

${PREFIX}/share/${PORTNAME} --> ${DATADIR}

2001-07-10 13:54:22 +00:00

coalesce

Add coalesce 1.50, a program to fit population models.

2001-08-06 14:41:58 +00:00

deft

Add %%PORTDOCS%% support to pkg-plist, and tweak Makefile slightly to support

2001-07-04 08:12:21 +00:00

dna-qc

Add dna-qc 1993.07.26, a quality control algorithm for DNA

2001-12-19 03:20:48 +00:00

emboss

- Update port to version 2.0.1

2001-08-03 11:32:42 +00:00

fasta

Replace erroneous usage of INSTALL_MAN with INSTALL_DATA.

2001-07-03 09:08:26 +00:00

fasta3

Replace erroneous usage of INSTALL_MAN with INSTALL_DATA.

2001-07-03 09:08:26 +00:00

fastdnaml

Add NOPORTDOCS support to pkg-plist

2001-07-08 18:15:34 +00:00

fluctuate

Add fluctuate 1.30, a program to fit population models.

2001-08-06 14:45:39 +00:00

gaussian98

Style police: WWW tags should either end in a file/script or TRAILING /; Fix the later case

2001-11-20 23:29:38 +00:00

genpak

Bump png major

2001-09-11 03:32:41 +00:00

gff2ps

Add gff2ps 0.97b, converts gff-formated genomic data-sets to

2001-12-19 10:03:26 +00:00

gperiodic

fix pkg-plist

2001-12-08 20:49:21 +00:00

grappa

- Update to version 1.0.3

2001-08-29 11:53:29 +00:00

hmmer

- Update port to version 2.2g

2001-08-22 13:18:10 +00:00

kinemage

Update to version 5.79.

2000-12-11 03:10:04 +00:00

lamarc

Add lamarc 2001.08.06,

2001-08-07 08:17:58 +00:00

migrate

- Update to version 1.2.4

2001-08-22 14:43:45 +00:00

molden

chase checksum for repacked distfile almost an year ago.

2001-11-06 13:32:44 +00:00

mopac

Add NOPORTDOCS support to pkg-plist

2001-07-08 18:15:34 +00:00

nab

Style police: WWW tags should either end in a file/script or TRAILING /; Fix the later case

2001-11-20 23:49:34 +00:00

ncbi-toolkit

- Add installation of include files

2001-09-19 13:03:18 +00:00

nclever

Add nclever 4.0, a character-based version of NCBI's Entrez program.

2001-09-26 09:22:02 +00:00

ortep3

File missing in pkg-plist

2000-10-30 15:36:57 +00:00

p5-AcePerl

Update to version 1.75

2001-08-13 11:27:36 +00:00

p5-bioperl

- Properly list run-time dependencies in RUN_DEPENDS in Makefile.

2001-08-13 10:26:44 +00:00

p5-bioperl-devel

- Add NO_LATEST_LINK, which should've been there in the first place. :-(

2001-09-20 15:11:14 +00:00

paml

- Update to version 3.1

2001-08-29 12:00:08 +00:00

phylip

- Update to version 3.6.a2.1 - since the distribution tarball hadn't been

2001-08-22 10:02:27 +00:00

pkg

As threatened, enforce the "Capital, no period" rule. Ellipses are

1999-06-26 17:19:19 +00:00

platon

add USE_XLIB

2001-07-30 21:05:54 +00:00

povchem

Clean up inefficient perl invocations; use multiple REs in the same call.

2001-01-07 17:49:52 +00:00

psi88

update WWW and master site

2001-10-22 06:36:14 +00:00

py-biopython

- Update the included (optional) Biopython-CORBA pacakge to version 0.3.0

2001-10-02 08:31:31 +00:00

rasmol

Fix a buglet with the use of XFREE86_VERSION without including

2001-09-06 22:36:38 +00:00

recombine

Add recombine 1.40, a program to fit population models across sites.

2001-08-06 14:49:53 +00:00

ruby-bio

Update to 0.3.3.

2001-12-21 21:25:16 +00:00

seaview

Change PKGDIR from pkg/ to . Also fix places where ${PKGDIR} is

2000-10-08 10:23:48 +00:00

seqio

Remove a redundant trailing space.

2001-10-21 07:55:45 +00:00

sim4

Update to version 2001.10.12.

2001-12-16 19:36:48 +00:00

tinker

style fix: un"echo" commands

2001-09-13 03:50:40 +00:00

treeviewx

Add treeviewx 0.1.1, a phylogenetic tree viewer.

2001-08-17 08:39:28 +00:00

xdrawchem

Update to 0.95.

2001-08-20 11:12:44 +00:00

xmolwt

Add NOPORTDOCS support to pkg-plist

2001-07-08 18:15:34 +00:00

Makefile

Initial import of artemis 4.0

2001-12-22 14:39:40 +00:00